Just to clarify their are a number of reasons why the MV and your Dope don't line up. In some cases the corrected MV could be correct, but other factors unknown to the shooter are influencing the data.
1. Distance to Chronograph not calculated and accounted for.
2. Use of a poor, or unreliable chronograph. Read Here:
http://www.appliedballisticsllc.com/Articles/ChronographChapter.pdf
3. SD of Ammunition is 15 or more (15 is minimum for good LR ammo, 20+ is junk).
4. Using the incorrect form factor (G1 instead of G7) Read Here:
http://www.bergerbullets.com/form-factors-a-useful-analysis-tool/
5. You can negate form factor issues by just not using them, nothing is going to be more accurate than our CDMs:
http://appliedballisticsllc.com/Articles/ABDOC130_CDM.pdf
6. Turret Tracking. Scope turrets are not always perfect, in fact a lot of shooters out there have turrets that do not track exactly. Here is how you can test them:
http://appliedballisticsllc.com/Articles/TallTarget.pdf. Luckily turret tracking errors can be calibrated out with an MV calibration. When you do the Tall Target test, you have to measure, with a tape measure, from the turrets to the target. An LRF is not accurate enough.
7. TMOA vs SMOA. Not all scopes, ballistic apps & more are made the same. It is always good to double check is your scope working in TMOA or SMOA. Its also good to make sure the software you are using is working in the same units you are. 1" @ 100 yards (SMOA) is not the same as actual MOA 1.047" @ 100 yards.
8. Verifying Range. You would be surprised how inaccurate LRF devices can be. Especially some of the cheaper ones. We recently did some LRF testing, and the actual results, vs advertised results were disappointing in a lot of cases. A lot of LRF devices are good to +/- 3%, some are off by 5% and more. The further you go out, the more of an issue this is. Even with 1% accuracy at 1000 yards that's +/- 10 yards. 3% error at even 800 yards +/-24 yards. Its always good that a user verifies their LRF is providing accurate results. As you should do with all of your equipment.
9. Not accounting for DOF + Lat (Vertical Coriolis). This one is interesting, because its so easy to account for. If your shots seem high, check to see your DOF. If you are shooting east, and your firing solution is high by 4 inches at 700 yards. It might be VCor, and not actual error.
10. Aerodynamic Jump. Luckily we have this one figured out for you guys. But the number of times I have heard "I am off by a tenth of a mil, or a fifteenth of a mil" and they didn't account for AJ. It has become more well known lately, and our software accurately calculates it for you. But none the less, its there, and has been the cause of errors for shooters before.
11. Incorrectly doing a Ballistic Calibration. This one is very common, multiple times a day common. So I will just leave this here:
http://www.appliedballisticsllc.com/Articles/BallisticCalibration.pdf
But, as you can see. A lot of things can manifest themselves, which can inaccurately pose a MV issue. Which can be corrected for with a slight adjustment to the MV.