Are the cases making contact with the ejection port? If they aren't bouncing forward, then it sounds like the ejector is hitting them a bit too early which is an easy thing to correct with some judicial filing. About a 10 degree back angle on the ejector with a bit of angle toward the port should get them throwing at 3-4:00 or thereabouts once you get things tuned properly. Being as the ejector is inexpensive and easy to replace, offering the suggestion that you start filing on it isn't that risky and you 'should' be able to make the empties go where you want them to.
Wouldn't hurt to make sure the extractor tension is set properly too as this plays a part in where the empties go, but if the gun is reliable I'd be cautious messing around too much with the extractor. How the case leaves the hook is one variable in ejection but I think the ejector would be the first place to look...assuming the gun is reliable.