In all cases getting a good glass to wood bond is critical. If the glass and wood are separating, that means you have a contamination layer in between. Wherever you plan to make a glass to wood bond, that area has to be clean and oil/wax free. That's really hard to do in some cases. Almost better to take the Dremmel and grind away material so you know you are into fresh stock material before making the bed. Also, leaving a rough surface is a good idea to aid in adhesion.
I also like Devcon products, but their full line is sometimes hard to come by. I do suggest using penetrating epoxy as a first coat to soak into the wood and provide a better bonding surface for the bedding compound. It's a process I use on lots of old hardwood repairs like cabinets and such.