What is probably causing those powder flakes is likely a load that is too light. I'm assuming you are referring to 2400, probably a typo or something? But if you are referring to 2400, it is a great powder, but it's one of those propellants that performs better at higher pressures. I'm not saying you need to jump into max end data, but at 14.5 grs. you are only .1 grs. above Hornady's published start charge, and hornady is conservative to begin with. But I would also like to commend you for using a proper approach to reloading, in that, you started at the bottom end, rather than just jumping into higher end charges.
And in the scope of other published data using 2400 with 125 gr. JHP's, Nosler, Sierra, and Speer all use significantly higher starting charges than Hornady.
I would bump your charge up a tad and see if it cleans up any, maybe go to 15.0 or so. And if you see some improvement you know your on the right track.
One other possible I considered is the crimp being too light. When using powders like 2400 and jacketed bullets, it is especially important to apply a full roll crimp over the bottom edge of the canelure, and touches the bottom of the canelure. This assures that the bullet won't jump up from the mouth as it approaches battery, and also helps produce a complete burn.
GS