Your lower isn't the problem it's your upper. I went through this several times with the retaining pins just marring the living crap outta the buffers. You guys are completely correct, when the upper mates with the lower I needs to push the buffer back ever so slightly.
You need to true / lap the face of your upper receiver.
Once I did that the problem completely went away on every affected rifle. Brownells makes a tool specifically for that.
http://www.brownells.com/gunsmith-t...15-lapping-tool-sku080000182-20220-44377.aspx
Sent from my iPhone using Tapatalk
EDIT:
I feel like I should add that you should only true the receiver face only AFTER having double and triple checked that everything else is in spec. I.E. Buffer retaining pin location and BCG.
Might be helpful for me to add that on one rifle even after truing and lapping the receiver face I was still getting ever so slight dings in the face of the buffer.
To solve this I disassembled, and used one of my DMT bench stones to take off a few hundredths from the receiver face. I'm sure a steady hand and a fine file would work just as good. Don't forget to true it up again. Wrap the threads in masking tape to protect them during the process.
What we're doing here is seating the barrel ever so slightly further into the upper which in turn pushes the BCG further in and that results in the BCG making proper contact with the buffer when you mate the upper to the lower.