The counter-boreing was done at refurb after the war to bring the rifle into spec, and accuracy standards. It was done to bring the crown to a sweet spot and resore/repair the weapon.
Id rather have a Mosin with a counterbore than one that needs it and dosent have it.
Most every Mosin I shot with milsurp ammo was accurate enough to hunt and fight with, depending on your use.
the three most important aspects of accurate shooting is a decent rifle , a decent load and a person with decent shooting skills. A Mosin will get you there. Some need slight tweeking, some are awsome right outta the cosmoline.