I wonder if they are talking about the bullet making contact with the flash suppressor or whatever the thing on the end of an M60 is called?
Actually, they are referring to SOUND suppressors, not FLASH suppressors. What they mean by a baffle strike is the bullet hits an internal part of the sound suppressor. Imagine a normal washer, a flat plate with a hole in it, that the bullet has to pass thruough. The bullet passes through the washer, or baffle, but the gas and sound bounces off, and gets reflected around inside the suppressor chamber. I'm sure there is more to it than that, but it's the best way I can explain it at the moment.
Now, a baffle strike is when the bullet hits the baffle, instead of going through the hole perfectly straight. This can severly damage the suppressor, and possibly cause injury to the shooter, I imagine.
If the bullet isn't stable enough, and wobbles, it can cause a baffle strike. That is why they recommend a higher twist rate with slower subsonic bullets.
As for subsonic ammunition, there are companies that make this in most of the popular calibers, such as .223 and .308. It's basically a really light load, with a heavy bullet. I can't find a link to any of them right now, but I have seen them.
Now keep in mind that I am not an expert by any means, so you should always do your own research. I hope this helps.