FWIW, the conventional wisdom is that aftermarket chokes are better. The reason being, that an aftermarket choke tube manufacturer's reputation (or at least part of it) is based around that one product. A shotgun manufacturer can make a nice ergonomic and user-friendly gun that sells itself but skimp on chokes because not very many people pay attention to them anyway. How many average folks actually pattern a shotgun?
I do believe that the higher end OEM chokes are pretty good though. Benelli Crio or Beretta Optimas come to mind. What Virginian said is probably spot on though. It is all a matter of the diameter of the bore to the diameter of the constriction.
Through it all though every single shotgun throws patterns differently regardless of the setup. There are also many controllable variables in play between the individual differences between the gun, the shotshell, the choke, the barrel length, etc. The number of different combinations are virtually limitless and it seems like changing any variable regarding said shotgun will effect the pattern in some minute or significant way.
Different manufactures of shotguns produce barrels with different diameters. Different choke manufacturers produce varying diameters of similarly labelled chokes too. In the end, the numbers do not mean anything. The only thing that matters is the pattern your particular setup throws.