I would say that if you don't lube the inside of your necks before running the expander through it, you could be adding run out to your cases.
Sometimes there is not too much you can do with factory brass. I have prepped brass for 2 different calibers in the past 2 weeks. All were Norma. I have 3 25-06s and am having a Ackley being made, so I purchased 250 cases. I didn't check the neck run out on all of them, but on most of the ones I did check, it was generally .0015- .002. I did check all the necks for thickness deviation. I found about 140 fo them were .001 or less, 70 of them were between .001 and .0015, and the remainder had more deviation than .0015 up to .002. I really had hope for a bit better uniformity.
My other cal was 30-06. I only had 100 of them. Using the same procedure as I used for the 25-06, I found the neck run out to be about the same, but checking the neck thickness variation, I had 70 with less than .001, 20 between .001 and .0015 and the other 10 were .002 or less. I was much happier with these results. If you wanted to help your situation at this point and wanted to spend the time doing it, neck turning the cases to get uniform neck thickness would help. I won't do it with the 30 cal but probably will for the middle group of the 25s. I have been told that neck thickness variations continue up throughout the case. I guess it makes sense, but will never know.
I have learned over the years that upon fire forming the neck runout will be virtually zippo when checking the oujtside of the neck , hence the importance of checking neck thickness deviation. It is at this point that our jobs are to keep as much of this concentricity as we can. I use bushing dies to neck size and a Coax press in which the die body floats in the press. After taking my time to not stress the cases, by sometimes bushing down the necks in 2 steps and using lube to do so, and carefully seating bullets with a Redding competition dies. I still end up with a couple of cases with more bullet run out than I would like. In general, most will be excellant (never perfect), some will be very good and then there are always a few which may end up having .003 to .004, with an exceptional one here and there worse.
I guess my point is that until you do all the prep and fireform them, you can expect neck and bullet runout no matter what brass you use. I do wish Lapua made a bigger selection of brass, but overall, I'm pretty happy with Norma.
I don't benchrest shoot, but I'll admit that I go a bit crazy and overboard trying to sqeeze out all the accuracy I can out of my rifles. It is fun and a labor of love.
Had to throw in my 2 cents.