Your gun may have endshake problems, which is the cylinder moving forward or backward at full lockup (when the gun is cocked). Unload the gun, cock it SA, and see if you can move the cylinder back and forth.
If you can, that's your problem. As the cylinder turns, it is rubbing against the back of the barrel and creating the resistance you feel. It's not as noticable in SA because you have more leverage on the hammer. There is a bushing on the axis the cylinder rotates around that keeps it spaced far enough away from the end of the barrel to keep from rubbing...this can wear out over time, resulting in the cylinder movement mentioned above.
A gap between the barrel and cylinder of .003" is too close, unless it's a target gun. .005" is ideal, and .007" is still within spec for some manufacturers, but toward the outer limit of desirability. If the gap is too small, the gun can jam if the front of the cylinder gets too dirty from firing residue. If it's too wide, you lose velocity and the escaping gases can wear away at the top strap of the gun.